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Publications

List of Publications

2025
2024

  • Patop I., Canori M. and S Kadener. “In Vivo Tissue-Specific Knockdown of circRNAs Using shRNAs in Drosophila melanogaster” Circular RNAs (2024), 161-172. 10.1007/978-1-0716-3678-7_9​

2023

  • Schmal, Christoph, Bert Maier, Reut Ashwal-Fluss, Osnat Bartok, Anna-Marie Finger, Tanja Bange, Stella Koutsouli et al. "Alternative polyadenylation factor CPSF6 regulates temperature compensation of the mammalian circadian clock." PLoS biology 21, no. 6 (2023): e3002164. 10.1371/journal.pbio.3002164

  • Patop, Ines L., Ane Martin Anduaga, Ivana L. Bussi, M. Fernanda Ceriani, and Sebastian Kadener. "Organismal landscape of clock cells and circadian gene expression in Drosophila." bioRxiv (2023). 10.1101/2023.05.23.542009.

2022

  • Herman, Neta, Sebastian Kadener, and Sagiv Shifman. "The chromatin factor ROW cooperates with BEAF‐32 in regulating long‐range inducible genes." EMBO reports 23, no. 12 (2022): e54720. doi.org/10.15252/embr.202254720

  • Rigal, Joyce, Ane Martin Anduaga, Elena Bitman, Emma Rivellese, Sebastian Kadener, and Michael T. Marr. "Artificially stimulating retrotransposon activity increases mortality and accelerates a subset of aging phenotypes in Drosophila." Elife 11 (2022): e80169. doi.org/10.7554/eLife.80169

  • Pamudurti, Nagarjuna Reddy, Ines Lucia Patop, Aishwarya Krishnamoorthy, Osnat Bartok, Roni Maya, Noam Lerner, Reut Ashwall-Fluss, Jacob Vinay Vikas Konakondla, Tsevi Beatus, and Sebastian Kadener. "circMbl functions in cis and in trans to regulate gene expression and physiology in a tissue-specific fashion." Cell reports 39, no. 4 (2022). 10.1016/j.celrep.2022.110740

  • Nielsen, Anne F., Albrecht Bindereif, Irene Bozzoni, Mor Hanan, Thomas B. Hansen, Manuel Irimia, Sebastian Kadener et al. "Best practice standards for circular RNA research." Nature methods 19, no. 10 (2022): 1208-1220. doi.org/10.1038/s41592-022-01487-2

  • Zaffagni, Michela, Jenna M. Harris, Ines L. Patop, Nagarjuna Reddy Pamudurti, Sinead Nguyen, and Sebastian Kadener. "SARS-CoV-2 Nsp14 mediates the effects of viral infection on the host cell transcriptome." Elife 11 (2022): e71945. 10.7554/eLife.71945

  • ​Torres-Méndez, Antonio, Sinziana Pop, Sophie Bonnal, Isabel Almudi, Alida Avola, Ruairí JV Roberts, Chiara Paolantoni et al. "Parallel evolution of a splicing program controlling neuronal excitability in flies and mammals." Science advances 8, no. 4 (2022): eabk0445. 10.1126/sciadv.abk0445

2021

  • Krishnamoorthy A, Kadener S. (2021). Using Drosophila to uncover molecular and physiological functions of circRNAs. Methods, 196:74-84. https://doi.org/10.1016/j.ymeth.2021.04.016

  • Rabin A, Zaffagni M, Ashwal-Fluss R, Patop IL, Jajoo A, Shenzis S, Carmel L, Kadener S. (2021). SRCP: a comprehensive pipeline for accurate annotation and quantification of circRNAs. Genome Biol, 22(1):277. https://doi.org/10.1186/s13059-021-02497-7

  • Litovchenko M, et al., Kadener S, Deplancke B. (2021). Extensive tissue-specific expression variation and novel regulators underlying circadian behavior. Sci Adv, 7(5):eabc3781. https://doi.org/10.1126/sciadv.abc3781

2020
2019

  • Foley, Lauren E., Jinli Ling, Radhika Joshi, Naveh Evantal, Sebastian Kadener, and Patrick Emery. "Drosophila PSI controls circadian period and the phase of circadian behavior under temperature cycle via tim splicing." Elife 8 (2019): e50063. 10.7554/eLife.50063

  • Evantal, N., A. M. Anduaga, O. Bartok, I. L. Patop, R. Weiss, and S. Kadener. "Thermosensitive alternative splicing senses and mediates temperature adaptation inDrosophila." (2018). 10.7554/eLife.44642

  • Simchovitz, Alon, Mor Hanan, Naomi Niederhoffer, Nimrod Madrer, Nadav Yayon, Estelle R. Bennett, David S. Greenberg, Sebastian Kadener, and Hermona Soreq. "NEAT1 is overexpressed in Parkinson’s disease substantia nigra and confers drug-inducible neuroprotection from oxidative stress." The FASEB Journal 33, no. 10 (2019): 11223.  10.1096/fj.201900830R

  • Patop, Ines Lucia, Stas Wüst, and Sebastian Kadener. "Past, present, and future of circ RNA s." The EMBO journal 38, no. 16 (2019): e100836. 10.15252/embj.2018100836

2018

  • Wittenbrink, Nicole, Bharath Ananthasubramaniam, Mirjam Münch, Barbara Koller, Bert Maier, Charlotte Weschke, Frederik Bes et al. "High-accuracy determination of internal circadian time from a single blood sample." The Journal of clinical investigation 128, no. 9 (2018): 3826-3839. 10.1172/JCI120874

  • Chatterjee, Abhishek, Angélique Lamaze, Joydeep De, Wilson Mena, Elisabeth Chélot, Béatrice Martin, Paul Hardin, Sebastian Kadener, Patrick Emery, and François Rouyer. "Reconfiguration of a multi-oscillator network by light in the Drosophila circadian clock." Current Biology 28, no. 13 (2018): 2007-2017. 10.1016/j.cub.2018.04.064

  • Patop, Ines Lucia, and Sebastian Kadener. "circRNAs in cancer." Current opinion in genetics & development 48 (2018): 121-127.  10.1016/j.gde.2017.11.007

2017

  • Hanan, Mor, Hermona Soreq, and Sebastian Kadener. "CircRNAs in the brain." RNA biology 14, no. 8 (2017): 1028-1034. 10.1080/15476286.2016.1255398

  • Chatterjee, Abhishek, Angélique Lamaze, Joydeep De, Wilson Mena, Elisabeth Chélot, Béatrice Martin, Paul Hardin, Sebastian Kadener, Patrick Emery, and François Rouyer. "Reconfiguration of a multi-oscillator network by light in the Drosophila circadian clock." Current Biology 28, no. 13 (2018): 2007-2017. 10.1016/j.cub.2018.04.064

  • Buchumenski, Ilana, Osnat Bartok, Reut Ashwal-Fluss, Varun Pandey, Hagit T. Porath, Erez Y. Levanon, and Sebastian Kadener. "Dynamic hyper-editing underlies temperature adaptation in Drosophila." PLoS genetics 13, no. 7 (2017): e1006931.  10.1371/journal.pgen.1006931

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