Publications

List of Publications

2025

Rados, Theopi, Olivia S. Leland, Pedro Escudeiro, John Mallon, Katherine Andre, Ido Caspy, Andriko von Kügelgen et al. "Tissue-like multicellular development triggered by mechanical compression in archaea." Science 388, no. 6742 (2025): 109-115. 10.1126/science.adu004
Kirio, Ken, Ines Lucia Patop, Ane Martin Anduaga, Jenna Harris, Nagarjuna Pamudurti, Claire Martel, and Sebastian Kadener. "Circular RNAs exhibit exceptional stability in the aging brain and serve as reliable age and experience indicators." Cell reports 44, no. 4 (2025). 10.1016/j.celrep.2025.115485

2024

Patop I., Canori M. and S Kadener. “In Vivo Tissue-Specific Knockdown of circRNAs Using shRNAs in Drosophila melanogaster” Circular RNAs (2024), 161-172. 10.1007/978-1-0716-3678-7_9

2023

Schmal, Christoph, Bert Maier, Reut Ashwal-Fluss, Osnat Bartok, Anna-Marie Finger, Tanja Bange, Stella Koutsouli et al. "Alternative polyadenylation factor CPSF6 regulates temperature compensation of the mammalian circadian clock." PLoS biology 21, no. 6 (2023): e3002164. 10.1371/journal.pbio.3002164
Patop, Ines L., Ane Martin Anduaga, Ivana L. Bussi, M. Fernanda Ceriani, and Sebastian Kadener. "Organismal landscape of clock cells and circadian gene expression in Drosophila." bioRxiv (2023). 10.1101/2023.05.23.542009.

2022

Herman, Neta, Sebastian Kadener, and Sagiv Shifman. "The chromatin factor ROW cooperates with BEAF‐32 in regulating long‐range inducible genes." EMBO reports 23, no. 12 (2022): e54720. doi.org/10.15252/embr.202254720
Rigal, Joyce, Ane Martin Anduaga, Elena Bitman, Emma Rivellese, Sebastian Kadener, and Michael T. Marr. "Artificially stimulating retrotransposon activity increases mortality and accelerates a subset of aging phenotypes in Drosophila." Elife 11 (2022): e80169. doi.org/10.7554/eLife.80169
Pamudurti, Nagarjuna Reddy, Ines Lucia Patop, Aishwarya Krishnamoorthy, Osnat Bartok, Roni Maya, Noam Lerner, Reut Ashwall-Fluss, Jacob Vinay Vikas Konakondla, Tsevi Beatus, and Sebastian Kadener. "circMbl functions in cis and in trans to regulate gene expression and physiology in a tissue-specific fashion." Cell reports 39, no. 4 (2022). 10.1016/j.celrep.2022.110740
Nielsen, Anne F., Albrecht Bindereif, Irene Bozzoni, Mor Hanan, Thomas B. Hansen, Manuel Irimia, Sebastian Kadener et al. "Best practice standards for circular RNA research." Nature methods 19, no. 10 (2022): 1208-1220. doi.org/10.1038/s41592-022-01487-2
Zaffagni, Michela, Jenna M. Harris, Ines L. Patop, Nagarjuna Reddy Pamudurti, Sinead Nguyen, and Sebastian Kadener. "SARS-CoV-2 Nsp14 mediates the effects of viral infection on the host cell transcriptome." Elife 11 (2022): e71945. 10.7554/eLife.71945
Torres-Méndez, Antonio, Sinziana Pop, Sophie Bonnal, Isabel Almudi, Alida Avola, Ruairí JV Roberts, Chiara Paolantoni et al. "Parallel evolution of a splicing program controlling neuronal excitability in flies and mammals." Science advances 8, no. 4 (2022): eabk0445. 10.1126/sciadv.abk0445

2021

Krishnamoorthy A, Kadener S. (2021). Using Drosophila to uncover molecular and physiological functions of circRNAs. Methods, 196:74-84. https://doi.org/10.1016/j.ymeth.2021.04.016
Rabin A, Zaffagni M, Ashwal-Fluss R, Patop IL, Jajoo A, Shenzis S, Carmel L, Kadener S. (2021). SRCP: a comprehensive pipeline for accurate annotation and quantification of circRNAs. Genome Biol, 22(1):277. https://doi.org/10.1186/s13059-021-02497-7
Litovchenko M, et al., Kadener S, Deplancke B. (2021). Extensive tissue-specific expression variation and novel regulators underlying circadian behavior. Sci Adv, 7(5):eabc3781. https://doi.org/10.1126/sciadv.abc3781

2020

Chen TC, et al., Kadener S, Sarnow P. (2020). Host-derived circular RNAs display proviral activities in Hepatitis C virus-infected cells. PLoS Pathog, 16(8):e1008346. https://doi.org/10.1371/journal.ppat.1008346
Simchovitz A, et al., Kadener S, Soreq H. (2020). A lncRNA survey finds increases in neuroprotective LINC-PINT in Parkinson's disease substantia nigra. Aging Cell, 19(3):e13115. https://doi.org/10.1111/acel.13115
Hanan M, et al., Kadener S. (2020). A Parkinson's disease CircRNAs Resource reveals a link between circSLC8A1 and oxidative stress. EMBO Mol Med, 12(9):e11942. https://doi.org/10.15252/emmm.201911942
Pamudurti NR, et al., Kadener S. (2020). An in vivo strategy for knockdown of circular RNAs. Cell Discov, 6:52. https://doi.org/10.1038/s41421-020-0182-y